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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RDss(RPackage):
"""Dispersion shrinkage for sequencing data
DSS is an R library performing differntial analysis for count-based
sequencing data. It detectes differentially expressed genes (DEGs) from
RNA-seq, and differentially methylated loci or regions (DML/DMRs) from
bisulfite sequencing (BS-seq). The core of DSS is a new dispersion
shrinkage method for estimating the dispersion parameter from Gamma-Poisson
or Beta-Binomial distributions."""
homepage = "http://bioconductor.org/packages/DSS/"
git = "https://git.bioconductor.org/packages/DSS"
version('2.38.0', commit='82e65b92e6e227f1f99620362db8b03059e07e98')
version('2.36.0', commit='841c7ed')
version('2.34.0', commit='f9819c7')
version('2.32.0', commit='ffb502d')
depends_on('r@3.3:', type=('build', 'run'))
depends_on('r-biobase', type=('build', 'run'))
depends_on('r-biocparallel', when='@2.36.0:', type=('build', 'run'))
depends_on('r-bsseq', type=('build', 'run'))
depends_on('r-delayedarray', when='@2.36.0:', type=('build', 'run'))
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