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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class RGdsfmt(RPackage):
"""R Interface to CoreArray Genomic Data Structure (GDS) Files.
This package provides a high-level R interface to CoreArray Genomic Data
Structure (GDS) data files, which are portable across platforms with
hierarchical structure to store multiple scalable array-oriented data
sets with metadata information. It is suited for large-scale datasets,
especially for data which are much larger than the available random-
access memory. The gdsfmt package offers the efficient operations
specifically designed for integers of less than 8 bits, since a diploid
genotype, like single-nucleotide polymorphism (SNP), usually occupies
fewer bits than a byte. Data compression and decompression are available
with relatively efficient random access. It is also allowed to read a
GDS file in parallel with multiple R processes supported by the package
parallel."""
bioc = "gdsfmt"
version('1.30.0', commit='d27dde6a70bb2295f5bbc8961152b45ccee7a652')
version('1.26.1', commit='bd180b21b1ace120035f0da255cbf6f13088f069')
version('1.20.0', commit='b1fbaba0a5ace3dc45daecc85168651cd85dce00')
version('1.18.1', commit='b911b953e9db7988e93ec2010b0ab1e384d073c9')
version('1.16.0', commit='49b011452585e432b983b68466a230c9b71d8a95')
version('1.14.1', commit='15743647b7eea5b82d3284858b4591fb6e59959d')
version('1.12.0', commit='d705a95b0bea7be2a2b37e939f45017337ba0fb6')
depends_on('r@2.15.0:', type=('build', 'run'))
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