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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class RGenetics(RPackage):
"""Population Genetics.
Classes and methods for handling genetic data. Includes classes to
represent genotypes and haplotypes at single markers up to multiple markers
on multiple chromosomes. Function include allele frequencies, flagging
homo/heterozygotes, flagging carriers of certain alleles, estimating and
testing for Hardy-Weinberg disequilibrium, estimating and testing for
linkage disequilibrium, ..."""
cran = "genetics"
license("GPL-2.0-or-later")
version("1.3.8.1.3", sha256="fef2c95f6a57f32b3cf4acf003480439462bb28297c501c617de307bfeee9252")
version("1.3.8.1.2", sha256="30cb67de2e901578fd802deb7fbfea6c93024c9fb6ea66cad88430a3a2a51eec")
depends_on("r-combinat", type=("build", "run"))
depends_on("r-gdata", type=("build", "run"))
depends_on("r-gtools", type=("build", "run"))
depends_on("r-mass", type=("build", "run"))
depends_on("r-mvtnorm", type=("build", "run"))
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