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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RIranges(RPackage):
"""Provides efficient low-level and highly
reusable S4 classes for storing,
manipulating and aggregating over annotated ranges of
integers. Implements an
algebra of range operations, including efficient
algorithms for finding overlaps
and nearest neighbors. Defines efficient list-like
classes for storing, transforming
and aggregating large grouped data,
i.e., collections of atomic vectors and DataFrames."""
homepage = "https://www.bioconductor.org/packages/IRanges/"
git = "https://git.bioconductor.org/packages/IRanges.git"
version('2.14.10', commit='c76118a38e84c7c764141adbd66ee350d0882bc9')
version('2.12.0', commit='1b1748655a8529ba87ad0f223f035ef0c08e7fcd')
version('2.10.5', commit='b00d1d5025e3c480d17c13100f0da5a0132b1614')
depends_on('r-biocgenerics@0.21.1:', type=('build', 'run'), when='@2.10.5')
depends_on('r-biocgenerics@0.23.3:', type=('build', 'run'), when='@2.12.0')
depends_on('r-biocgenerics@0.25.3:', type=('build', 'run'), when='@2.14.10')
depends_on('r-s4vectors@0.13.17:', type=('build', 'run'), when='@2.10.5')
depends_on('r-s4vectors@0.15.5:', type=('build', 'run'), when='@2.12.0')
depends_on('r-s4vectors@0.18.2:', type=('build', 'run'), when='@2.14.10')
depends_on('r@3.4.0:3.4.9', when='@2.10.5', type=('build', 'run'))
depends_on('r@3.5.0:3.5.9', when='@2.14.10', type=('build', 'run'))
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