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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RMergemaid(RPackage):
"""The functions in this R extension are intended for cross-study
comparison of gene expression array data. Required from the user is
gene expression matrices, their corresponding gene-id vectors and
other useful information, and they could be 'list','matrix', or
'ExpressionSet'. The main function is 'mergeExprs' which transforms
the input objects into data in the merged format, such that common
genes in different datasets can be easily found. And the function
'intcor' calculate the correlation coefficients. Other functions use
the output from 'modelOutcome' to graphically display the results and
cross-validate associations of gene expression data with survival."""
homepage = "https://www.bioconductor.org/packages/MergeMaid/"
git = "https://git.bioconductor.org/packages/MergeMaid.git"
version('2.48.0', commit='aee89c523fcafff4c166ff3db4fff90df16a1ed4')
depends_on('r-survival', type=('build', 'run'))
depends_on('r-biobase', type=('build', 'run'))
depends_on('r-mass', type=('build', 'run'))
depends_on('r@3.4.0:3.4.9', when='@2.48.0')
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