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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class RPscbs(RPackage):
"""Analysis of Parent-Specific DNA Copy Numbers.
Segmentation of allele-specific DNA copy number data and detection of
regions with abnormal copy number within each parental chromosome. Both
tumor-normal paired and tumor-only analyses are supported."""
cran = "PSCBS"
version("0.66.0", sha256="58805636e55e0fd3f57bd4a0e296a8bb3d57a7bdd0fdd5868a73ddc83d173a93")
version("0.65.0", sha256="3365065d5375c599eb024bfff12c5f6b10a6b1a4fe4ba6f200f7e83618dd399a")
depends_on("r@3.2.0:", type=("build", "run"))
depends_on("r-r-methodss3@1.7.1:", type=("build", "run"))
depends_on("r-r-methodss3@1.8.1:", type=("build", "run"), when="@0.66.0:")
depends_on("r-r-oo@1.22.1:", type=("build", "run"))
depends_on("r-r-oo@1.24.0:", type=("build", "run"), when="@0.66.0:")
depends_on("r-r-utils@2.8.0:", type=("build", "run"))
depends_on("r-r-utils@2.11.0:", type=("build", "run"), when="@0.66.0:")
depends_on("r-r-cache@0.13.0:", type=("build", "run"))
depends_on("r-r-cache@0.15.0:", type=("build", "run"), when="@0.66.0:")
depends_on("r-matrixstats@0.54.0:", type=("build", "run"))
depends_on("r-matrixstats@0.61.0:", type=("build", "run"), when="@0.66.0:")
depends_on("r-aroma-light@2.4.0:", type=("build", "run"))
depends_on("r-dnacopy@1.42.0:", type=("build", "run"))
depends_on("r-listenv@0.7.0:", type=("build", "run"))
depends_on("r-listenv@0.8.0:", type=("build", "run"), when="@0.66.0:")
depends_on("r-future@1.12.0:", type=("build", "run"))
depends_on("r-future@1.22.1:", type=("build", "run"), when="@0.66.0:")
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