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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class RRnaseqmap(RPackage):
"""rnaSeq secondary analyses.
The rnaSeqMap library provides classes and functions to analyze the RNA-
sequencing data using the coverage profiles in multiple samples at a
time"""
bioc = "rnaSeqMap"
version("2.48.0", commit="a8c515e518cebf571d1524c3a8a986ba7d1557db")
version("2.42.0", commit="3a3a1030cc38d79d04536e0ab16114e4fa6721cf")
version("2.40.1", commit="c122d645b3503fb1a061f5515e4f8cf2863b3ba3")
version("2.38.0", commit="5eb9583bfacd375161739a8ae6057204487f8b9e")
version("2.36.0", commit="69c46fa467be0ac30776ede85a521f7622539b7e")
version("2.34.0", commit="7881bc00600ed824ac437edf3cfba35573261e46")
depends_on("r@2.11.0:", type=("build", "run"))
depends_on("r-biobase", type=("build", "run"))
depends_on("r-rsamtools", type=("build", "run"))
depends_on("r-genomicalignments", type=("build", "run"))
depends_on("r-genomicranges", type=("build", "run"))
depends_on("r-iranges", type=("build", "run"))
depends_on("r-edger", type=("build", "run"))
depends_on("r-deseq", type=("build", "run"))
depends_on("r-dbi", type=("build", "run"))
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