summaryrefslogtreecommitdiff
path: root/var/spack/repos/builtin/packages/r-seqinr/package.py
blob: 576fc1dab734d5c0adab91ee03015d3d3ea67cdb (plain) (blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack import *


class RSeqinr(RPackage):
    """Biological Sequences Retrieval and Analysis

    Exploratory data analysis and data visualization for biological sequence
    (DNA and protein) data. Seqinr includes utilities for sequence data
    management under the ACNUC system described in Gouy, M. et al. (1984)
    Nucleic Acids Res. 12:121-127 <doi:10.1093/nar/12.1Part1.121>."""

    homepage = "https://seqinr.r-forge.r-project.org"
    url      = "https://cloud.r-project.org/src/contrib/seqinr_3.3-6.tar.gz"
    list_url = "https://cloud.r-project.org/src/contrib/Archive/seqinr"

    version('4.2-5', sha256='de9860759c23af2ec2f2ef03b5dd1cea72c804438eadd369b7d9269bdf8d32fc')
    version('3.4-5', sha256='162a347495fd52cbb62e8187a4692e7c50b9fa62123c5ef98f2744c98a05fb9f')
    version('3.3-6', sha256='42a3ae01331db744d67cc9c5432ce9ae389bed465af826687b9c10216ac7a08d')

    depends_on('r@2.10:', type=('build', 'run'))
    depends_on('r-ade4', type=('build', 'run'))
    depends_on('r-segmented', type=('build', 'run'))
    depends_on('zlib')