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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class RTwosamplemr(RPackage):
"""Two Sample MR functions and interface to MR Base database.
A package for performing Mendelian randomization using GWAS summary data.
It uses the IEU GWAS database to obtain data automatically, and a wide
range of methods to run the analysis. You can use the MR-Base web app to
try out a limited range of the functionality in this package, but for any
serious work we strongly recommend using this R package."""
homepage = "https://mrcieu.github.io/TwoSampleMR/"
url = "https://github.com/MRCIEU/TwoSampleMR/archive/refs/tags/v0.5.6.tar.gz"
license("MIT")
version("0.5.6", sha256="c63eb008ab7ed08a6f30ccbf0c299beb31b2f5835e5e2aa1b59c5e4fe284a30c")
depends_on("r@3.6.0:", type=("build", "run"))
depends_on("r-ieugwasr@0.1.5:", type=("build", "run"))
depends_on("r-ggplot2", type=("build", "run"))
depends_on("r-gridextra", type=("build", "run"))
depends_on("r-cowplot", type=("build", "run"))
depends_on("r-plyr", type=("build", "run"))
depends_on("r-reshape2", type=("build", "run"))
depends_on("r-stringr", type=("build", "run"))
depends_on("r-knitr", type=("build", "run"))
depends_on("r-markdown", type=("build", "run"))
depends_on("r-gtable", type=("build", "run"))
depends_on("r-rmarkdown", type=("build", "run"))
depends_on("r-mendelianrandomization", type=("build", "run"))
depends_on("r-dplyr", type=("build", "run"))
depends_on("r-mr-raps", type=("build", "run"))
depends_on("r-psych", type=("build", "run"))
depends_on("r-magrittr", type=("build", "run"))
depends_on("r-car", type=("build", "run"))
depends_on("r-randomforest", type=("build", "run"))
depends_on("r-meta", type=("build", "run"))
depends_on("r-data-table", type=("build", "run"))
depends_on("r-mrpresso", type=("build", "run"))
depends_on("r-mrinstruments", type=("build", "run"))
depends_on("r-radialmr", type=("build", "run"))
depends_on("r-mrmix", type=("build", "run"))
depends_on("r-glmnet", type=("build", "run"))
depends_on("r-lattice", type=("build", "run"))
depends_on("r-pbapply", type=("build", "run"))
depends_on("r-mass", type=("build", "run"))
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