1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
|
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class RVariantannotation(RPackage):
"""Annotation of Genetic Variants.
Annotate variants, compute amino acid coding changes, predict coding
outcomes."""
bioc = "VariantAnnotation"
version("1.46.0", commit="80d43e024bead5afd48cb86910ba4670d8d37424")
version("1.44.0", commit="2e7e0a3b7c1918c0d64170dc7c173a636d3764f4")
version("1.42.1", commit="d1121696c76c189d6b4df9914806bf585a495845")
version("1.40.0", commit="50ead7cb60cedf3c053853fab92d9f104f9f85bd")
version("1.36.0", commit="9918bd19a2e6f89e5edc5fe03c8812f500bb3e19")
version("1.30.1", commit="fb1ab00872570afb280522c4663e347dafc07a9e")
version("1.28.13", commit="0393347b8ce2d5edf1a61589be93e6a93eda3419")
version("1.26.1", commit="60ae67598cc3d7ed20ee6417920f8c209085faaf")
version("1.24.5", commit="468d7f53fd743e04c9af853d58e871b4cc13a090")
version("1.22.3", commit="3a91b6d4297aa416d5f056dec6f8925eb1a8eaee")
depends_on("r@2.8.0:", type=("build", "run"))
depends_on("r@4.0.0:", type=("build", "run"), when="@1.40.0:")
depends_on("r-biocgenerics@0.15.3:", type=("build", "run"))
depends_on("r-biocgenerics@0.37.0:", type=("build", "run"), when="@1.40.0:")
depends_on("r-matrixgenerics", type=("build", "run"), when="@1.36.0:")
depends_on("r-genomeinfodb@1.11.4:", type=("build", "run"))
depends_on("r-genomeinfodb@1.15.2:", type=("build", "run"), when="@1.26.1:")
depends_on("r-genomicranges@1.27.6:", type=("build", "run"))
depends_on("r-genomicranges@1.31.8:", type=("build", "run"), when="@1.26.1:")
depends_on("r-genomicranges@1.41.5:", type=("build", "run"), when="@1.36.0:")
depends_on("r-summarizedexperiment@1.5.3:", type=("build", "run"))
depends_on("r-summarizedexperiment@1.19.5:", type=("build", "run"), when="@1.36.0:")
depends_on("r-rsamtools@1.23.10:", type=("build", "run"))
depends_on("r-rsamtools@1.31.2:", type=("build", "run"), when="@1.26.1:")
depends_on("r-rsamtools@1.33.6:", type=("build", "run"), when="@1.28.13:")
depends_on("r-rsamtools@1.99.0:", type=("build", "run"), when="@1.30.1:")
depends_on("r-dbi", type=("build", "run"))
depends_on("r-zlibbioc", type=("build", "run"))
depends_on("r-biobase", type=("build", "run"))
depends_on("r-s4vectors@0.13.13:", type=("build", "run"))
depends_on("r-s4vectors@0.17.24:", type=("build", "run"), when="@1.26.1:")
depends_on("r-s4vectors@0.27.12:", type=("build", "run"), when="@1.36.0:")
depends_on("r-iranges@2.3.25:", type=("build", "run"))
depends_on("r-iranges@2.13.13:", type=("build", "run"), when="@1.26.1:")
depends_on("r-iranges@2.23.9:", type=("build", "run"), when="@1.36.0:")
depends_on("r-xvector@0.5.6:", type=("build", "run"))
depends_on("r-xvector@0.19.7:", type=("build", "run"), when="@1.26.1:")
depends_on("r-xvector@0.29.2:", type=("build", "run"), when="@1.36.0:")
depends_on("r-biostrings@2.33.5:", type=("build", "run"))
depends_on("r-biostrings@2.47.6:", type=("build", "run"), when="@1.26.1:")
depends_on("r-biostrings@2.57.2:", type=("build", "run"), when="@1.36.0:")
depends_on("r-annotationdbi@1.27.9:", type=("build", "run"))
depends_on("r-rtracklayer@1.25.16:", type=("build", "run"))
depends_on("r-rtracklayer@1.39.7:", type=("build", "run"), when="@1.26.1:")
depends_on("r-bsgenome@1.37.6:", type=("build", "run"))
depends_on("r-bsgenome@1.47.3:", type=("build", "run"), when="@1.26.1:")
depends_on("r-genomicfeatures@1.27.4:", type=("build", "run"))
depends_on("r-genomicfeatures@1.31.3:", type=("build", "run"), when="@1.26.1:")
depends_on("r-rhtslib", type=("build", "run"), when="@1.30.1:")
depends_on("r-rhtslib@1.99.3:", type=("build", "run"), when="@1.44.0:")
depends_on("gmake", type="build")
# Not listed but needed
depends_on("curl")
|
