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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class RaxmlNg(CMakePackage):
"""RAxML-NG is a phylogenetic tree inference tool which uses
maximum-likelihood (ML) optimality criterion.
Its search heuristic is based on iteratively performing a series
of Subtree Pruning and Regrafting (SPR) moves,
which allows to quickly navigate to the best-known ML tree.
RAxML-NG is a successor of RAxML (Stamatakis 2014) and leverages
the highly optimized likelihood computation implemented in libpll
(Flouri et al. 2014)."""
homepage = "https://github.com/amkozlov/raxml-ng/wiki"
url = "https://github.com/amkozlov/raxml-ng/archive/1.0.1.tar.gz"
git = "https://github.com/amkozlov/raxml-ng.git"
license("AGPL-3.0-only")
version("1.1.0", submodules=True)
version("1.0.2", submodules=True)
version("1.0.1", submodules=True)
variant("mpi", default=True, description="Use MPI")
depends_on("bison")
depends_on("flex")
depends_on("gmp")
depends_on("mpi", when="+mpi")
def cmake_args(self):
return [self.define_from_variant("USE_MPI", "mpi")]
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