1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
|
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class RdpClassifier(Package, SourceforgePackage):
"""The RDP Classifier is a naive Bayesian classifier that can rapidly and
accurately provides taxonomic assignments from domain to genus, with
confidence estimates for each assignment."""
homepage = "http://rdp.cme.msu.edu/"
sourceforge_mirror_path = "rdp-classifier/rdp_classifier_2.12.zip"
license("GPL-2.0-only")
version("2.12", sha256="977896248189a1ce2146dd3a61d203c3c6bc9aa3982c60332d463832922f7d0a")
depends_on("java", type=("build", "run"))
def install(self, spec, prefix):
mkdirp(prefix.bin)
install(join_path("dist", "classifier.jar"), prefix.bin)
install_tree(join_path("dist", "lib"), prefix.bin.lib)
install(join_path("lib", "junit-4.8.2.jar"), prefix.bin.lib)
install_tree("src", prefix.src)
|
