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From 0448e229d5c38d00e8a4b9f7081a862e966f8c17 Mon Sep 17 00:00:00 2001
From: Evan Bollig <ebbollig@amazon.com>
Date: Tue, 9 Feb 2021 09:48:13 -0600
Subject: [PATCH] Simple patch to fix intel mkl linking
---
src/apps/CMakeLists.txt | 8 ++++++++
1 file changed, 8 insertions(+)
diff --git a/src/apps/CMakeLists.txt b/src/apps/CMakeLists.txt
index 9f23f797..b26d373d 100644
--- a/src/apps/CMakeLists.txt
+++ b/src/apps/CMakeLists.txt
@@ -212,6 +212,14 @@ foreach (_target ${RELION_TARGETS})
target_link_libraries(${_target} ${LIB} ${EXTRA_LIBS} ${MPI_LIBRARIES} ${CMAKE_DL_LIBS})
else()
target_link_libraries(${_target} ${LIB} ${FFTW_LIBRARIES} ${EXTRA_LIBS} ${MPI_LIBRARIES} ${CMAKE_DL_LIBS})
+ # Intel MKL needs to be last in the list
+ if("${CMAKE_CXX_COMPILER_ID}" STREQUAL "Intel")
+ SET(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -fopenmp -mkl -limf ")
+ #target_link_libraries(${_target} "fopenmp" "mkl" "imf")
+ else()
+ #SET(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -lmkl_intel_ilp64 -lmkl_core -lmkl_sequential ")
+ target_link_libraries(${_target} "mkl_intel_ilp64" "mkl_core" "mkl_sequential")
+ endif()
endif(NOT MKLFFT)
if(CUDA_FOUND)
--
2.25.1
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