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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Revbayes(CMakePackage):
"""Bayesian phylogenetic inference using probabilistic graphical models
and an interpreted language."""
homepage = "https://revbayes.github.io"
url = "https://github.com/revbayes/revbayes/archive/v1.0.11.tar.gz"
version('1.0.11', sha256='7e81b1952e3a63cb84617fa632f4ccdf246b4d79e7d537a423540de047dadf50')
version('1.0.10', sha256='95e9affe8ca8d62880cf46778b6ec9dd8726e62a185670ebcbadf2eb2bb79f93')
version('1.0.4', md5='5d6de96bcb3b2686b270856de3555a58',
url='https://github.com/revbayes/revbayes/archive/v1.0.4-release.tar.gz')
variant('mpi', default=True, description='Enable MPI parallel support')
depends_on('boost')
depends_on('mpi', when='+mpi')
conflicts('%gcc@7.1.0:')
root_cmakelists_dir = 'projects/cmake/build'
@run_before('cmake')
def regenerate(self):
with working_dir(join_path('projects', 'cmake')):
mkdirp('build')
edit = FileFilter('regenerate.sh')
edit.filter('boost="true"', 'boost="false"')
if '+mpi' in self.spec:
edit.filter('mpi="false"', 'mpi="true"')
regenerate = Executable('./regenerate.sh')
regenerate()
def install(self, spec, prefix):
mkdirp(prefix.bin)
if '+mpi' in spec:
install_path = join_path(self.build_directory, '..', 'rb-mpi')
install(install_path, prefix.bin)
else:
install_path = join_path(self.build_directory, '..', 'rb')
install(install_path, prefix.bin)
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