1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
|
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Rsem(MakefilePackage):
"""RSEM is a software package for estimating gene and isoform expression
levels from RNA-Seq data."""
homepage = "https://deweylab.github.io/RSEM/"
url = "https://github.com/deweylab/RSEM/archive/v1.3.0.tar.gz"
license("GPL-3.0-or-later")
version("1.3.3", sha256="90e784dd9df8346caa2a7e3ad2ad07649608a51df1c69bfb6e16f45e611a40dc")
version("1.3.1", sha256="93c749a03ac16e94b1aab94d032d4fd5687d3261316ce943ecb89d3ae3ec2e11")
version("1.3.0", sha256="ecfbb79c23973e1c4134f05201f4bd89b0caf0ce4ae1ffd7c4ddc329ed4e05d2")
depends_on("r", type=("build", "run"))
depends_on("perl", type=("build", "run"))
depends_on("python", type=("build", "run"))
depends_on("bowtie")
depends_on("bowtie2")
depends_on("star")
def install(self, spec, prefix):
make("install", "DESTDIR=%s" % prefix, "prefix=")
|
