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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Rsem(MakefilePackage):
"""RSEM is a software package for estimating gene and isoform expression
levels from RNA-Seq data."""
homepage = "https://deweylab.github.io/RSEM/"
url = "https://github.com/deweylab/RSEM/archive/v1.3.0.tar.gz"
version('1.3.1', sha256='93c749a03ac16e94b1aab94d032d4fd5687d3261316ce943ecb89d3ae3ec2e11')
version('1.3.0', sha256='ecfbb79c23973e1c4134f05201f4bd89b0caf0ce4ae1ffd7c4ddc329ed4e05d2')
depends_on('r', type=('build', 'run'))
depends_on('perl', type=('build', 'run'))
depends_on('python', type=('build', 'run'))
depends_on('bowtie')
depends_on('bowtie2')
depends_on('star')
def install(self, spec, prefix):
make('install', 'DESTDIR=%s' % prefix, 'prefix=')
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