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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Salmon(CMakePackage):
"""Salmon is a tool for quantifying the expression of transcripts using
RNA-seq data."""
homepage = "http://combine-lab.github.io/salmon/"
url = "https://github.com/COMBINE-lab/salmon/archive/v0.8.2.tar.gz"
version('0.12.0', sha256='91ebd1efc5b0b4c12ec6babecf3c0b79f7102e42b8895ca07c8c8fea869fefa3')
version('0.9.1', '1277b8ed65d2c6982ed176a496a2a1e3')
version('0.8.2', 'ee512697bc44b13661a16d4e14cf0a00')
depends_on('tbb')
depends_on('boost@:1.66.0')
def patch(self):
# remove static linking to libstdc++
filter_file('-static-libstdc++', '', 'CMakeLists.txt', string=True)
def cmake_args(self):
args = ['-DBOOST_ROOT=%s' % self.spec['boost'].prefix]
return args
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