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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Sambamba(Package):
"""Sambamba: process your BAM data faster (bioinformatics)"""
homepage = "https://lomereiter.github.io/sambamba/"
git = "https://github.com/lomereiter/sambamba.git"
license("GPL-2.0-only")
version(
"0.6.6", tag="v0.6.6", commit="63cfd5c7b3053e1f7045dec0b5a569f32ef73d06", submodules=True
)
depends_on("ldc~shared", type=("build", "link"))
depends_on("python", type="build")
resource(name="undeaD", git="https://github.com/dlang/undeaD.git", tag="v1.0.7")
patch("Makefile.patch")
parallel = False
def install(self, spec, prefix):
make("sambamba-ldmd2-64")
mkdirp(prefix.bin)
for filename in ("build/sambamba", "build/sambamba.debug"):
install(filename, prefix.bin)
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