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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Sambamba(Package):
"""Sambamba: process your BAM data faster (bioinformatics)"""
homepage = "https://lomereiter.github.io/sambamba/"
git = "https://github.com/lomereiter/sambamba.git"
version('0.6.6', tag='v0.6.6', submodules=True)
depends_on('ldc~shared', type=('build', 'link'))
depends_on('python', type='build')
resource(
name='undeaD',
git='https://github.com/dlang/undeaD.git',
tag='v1.0.7',
)
patch('Makefile.patch')
parallel = False
def install(self, spec, prefix):
make('sambamba-ldmd2-64')
mkdirp(prefix.bin)
for filename in ('build/sambamba', 'build/sambamba.debug'):
install(filename, prefix.bin)
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