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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class SentieonGenomics(Package):
"""Sentieon provides complete solutions for secondary DNA analysis.
Our software improves upon BWA, GATK, Mutect, and Mutect2 based pipelines.
The Sentieon tools are deployable on any CPU-based computing system.
Use of this software is subject to the EULA at:
https://www.sentieon.com/EULA/eula-aws.html
Please set the path to the sentieon license server with:
export SENTIEON_LICENSE=<FQDN>:<PORT>
"""
homepage = "https://www.sentieon.com/"
# url is from the permalink documented in dockerfile at
# https://github.com/Sentieon/sentieon-docker/blob/master/Dockerfile
# See also: https://github.com/spack/spack/pull/30145/files#r853275635
url = "https://s3.amazonaws.com/sentieon-release/software/sentieon-genomics-201808.01.tar.gz"
maintainers("snehring")
version("202308", sha256="d663067f46e499c23819e344cf548fdc362abbf94d3ef086a2e655c072ebe0d6")
version("202112.07", sha256="7178769bb5a9619840996356bda4660410fb6f228b2c0b86611bcb1c6bcfc2e1")
version("202112.06", sha256="18306036f01c3d41dd7ae738b18ae76fd6b666f1172dd4696cd55b4a8465270d")
version("202112.05", sha256="c97b14b0484a0c0025115ad7b911453af7bdcd09874c26cbc39fd0bc5588a306")
version("202112.04", sha256="154732dc752476d984908e78b1fc5120d4f23028ee165cc4a451ecc1df0e0246")
version("202112.02", sha256="033943df7958550fd42b410d34ae91a8956a905fc90ca8baa93d2830f918872c")
version("201808.07", sha256="fb66b18a7b99e44968eb2c3a6a5b761d6b1e70fba9f7dfc4e5db3a74ab3d3dd9")
version("201808.01", sha256="6d77bcd5a35539549b28eccae07b19a3b353d027720536e68f46dcf4b980d5f7")
# Licensing.
license_require = True
license_vars = ["SENTIEON_LICENSE"]
def install(self, spec, prefix):
install_tree("bin", prefix.bin)
install_tree("doc", prefix.doc)
install_tree("etc", prefix.etc)
install_tree("lib", prefix.lib)
install_tree("libexec", prefix.libexec)
install_tree("share", prefix.share)
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