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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Sga(AutotoolsPackage):
"""SGA is a de novo genome assembler based on the concept of string graphs.
The major goal of SGA is to be very memory efficient, which is achieved
by using a compressed representation of DNA sequence reads."""
homepage = "https://www.msi.umn.edu/sw/sga"
url = "https://github.com/jts/sga/archive/v0.10.15.tar.gz"
version('0.10.15', '990aed1593f8072650c6366e5cf32519')
version('0.10.14', '211edb372898d6515dcde98d17078b7b')
version('0.10.13', 'd4f6aefc48c940dba96cc6513649ecdd')
version('0.10.12', '993bc165b4c77b75a5a2fe01c200c0da')
version('0.10.11', 'b649da5471209f50df2d53f0f2bfa0ed')
version('0.10.10', '494ff18d82b34cdaf8432b48b0356aae')
version('0.10.9', 'c2111bfd278d8faaab19732aec79fa78')
version('0.10.8', '4d75f836eaae6018d993a0b75326014a')
version('0.10.3', 'b12d35b24ca8a63c4dcc9f5d7e7c4133')
depends_on('zlib')
depends_on('sparsehash')
depends_on('jemalloc')
depends_on('bamtools')
depends_on('autoconf', type='build')
depends_on('automake', type='build')
depends_on('libtool', type='build')
configure_directory = 'src'
def configure_args(self):
return [
'--with-sparsehash={0}'.format(self.spec['sparsehash'].prefix),
'--with-bamtools={0}'.format(self.spec['bamtools'].prefix),
'--with-jemalloc={0}'.format(self.spec['jemalloc'].prefix)
]
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