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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Sickle(MakefilePackage):
"""Sickle is a tool that uses sliding windows along with quality and
length thresholds to determine when quality is sufficiently low to trim
the 3'-end of reads and also determines when the quality is
sufficiently high enough to trim the 5'-end of reads."""
homepage = "https://github.com/najoshi/sickle"
url = "https://github.com/najoshi/sickle/archive/v1.33.tar.gz"
license("MIT")
version("1.33", sha256="eab271d25dc799e2ce67c25626128f8f8ed65e3cd68e799479bba20964624734")
depends_on("zlib-api")
def install(self, spec, prefix):
mkdirp(prefix.bin)
install("sickle", prefix.bin)
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