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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Smartdenovo(MakefilePackage):
"""SMARTdenovo is a de novo assembler for PacBio and Oxford Nanopore
(ONT) data."""
homepage = "https://github.com/ruanjue/smartdenovo"
git = "https://github.com/ruanjue/smartdenovo.git"
license("GPL-3.0-only")
version("master", branch="master")
depends_on("sse2neon", when="target=aarch64:")
patch(
"aarch64.patch",
sha256="7dd4bca28aafb0680cc1823aa58ac9000819993538e92628554666c4b3acc470",
when="target=aarch64:",
)
patch(
"inline-limit.patch",
sha256="9f514ed72c37cf52ee2ffbe06f9ca1ed5a3e0819dab5876ecd83107c5e5bed81",
)
def install(self, spec, prefix):
install_files = [
"pairaln",
"wtpre",
"wtcyc",
"wtmer",
"wtzmo",
"wtobt",
"wtclp",
"wtext",
"wtgbo",
"wtlay",
"wtcns",
"wtmsa",
]
mkdirp(prefix.bin)
for f in install_files:
install(f, prefix.bin)
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