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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import os
from spack.package import *
class Sonlib(MakefilePackage):
"""sonLib is a compact C/Python library for
sequence analysis in bioinformatics."""
# This is sonlib as needed by the hal package which expects
# a side by side compilation
#
# If you need to use sonlib then you want py-sonlib
homepage = "https://github.com/ComparativeGenomicsToolkit"
url = "https://github.com/ComparativeGenomicsToolkit/sonLib"
git = "https://github.com/ComparativeGenomicsToolkit/sonLib.git"
license("MIT")
version("master", branch="master")
version("2020-04-01", commit="7ebe2ede05a6ee366d93a7a993db69a99943a68f")
def setup_build_environment(self, env):
binpath = os.path.join(self.stage.source_path, "bin")
libpath = os.path.join(self.stage.source_path, "lib")
env.set("BINDIR", binpath)
env.set("LIBDIR", libpath)
def build(self, spec, prefix):
binpath = os.path.join(self.stage.source_path, "bin")
libpath = os.path.join(self.stage.source_path, "lib")
mkdir(binpath)
mkdir(libpath)
make()
def install(self, spec, prefix):
install_tree("bin", prefix.bin)
install_tree("lib", prefix.lib)
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