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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Sortmerna(CMakePackage):
"""SortMeRNA is a program tool for filtering, mapping and OTU-picking NGS
reads in metatranscriptomic and metagenomic data"""
homepage = "https://github.com/biocore/sortmerna"
git = "https://github.com/biocore/sortmerna.git"
license("LGPL-3.0-or-later")
version("2017-07-13", commit="8bde6fa113a5d99a23ae81b48eeea6760e966094")
depends_on("zlib-api")
depends_on("sse2neon", when="target=aarch64:")
patch("for_aarch64.patch", when="target=aarch64:")
def install(self, spec, prefix):
mkdirp(prefix.bin)
with working_dir(join_path(self.build_directory, "src", "indexdb")):
install("indexdb", prefix.bin)
with working_dir(join_path(self.build_directory, "src", "sortmerna")):
install("sortmerna", prefix.bin)
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