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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Steps(CMakePackage):
"""STochastic Engine for Pathway Simulation"""
homepage = "https://groups.oist.jp/cnu/software"
git = "https://github.com/CNS-OIST/STEPS.git"
maintainers("tristan0x")
license("GPL-3.0-or-later")
version("develop", branch="master", submodules=True)
version("4.1.1", submodules=True)
variant(
"codechecks",
default=False,
description="Perform additional code checks like code formatting or static analysis",
)
variant("lapack", default=False, description="Use new BDSystem/Lapack code for E-Field solver")
variant(
"distmesh", default=True, when="+mpi", description="Add solvers based on distributed mesh"
)
variant("petsc", default=True, description="Use PETSc library for parallel E-Field solver")
variant("mpi", default=True, description="Use MPI for parallel solvers")
variant("coverage", default=False, description="Enable code coverage")
variant("bundle", default=False, description="Use bundled libraries")
variant("stochtests", default=True, description="Add stochastic tests to ctests")
variant(
"build_type",
default="RelWithDebInfo",
description="CMake build type",
values=("Debug", "Release", "RelWithDebInfo", "MinSizeRel", "RelWithDebInfoAndAssert"),
)
variant(
"caliper", default=False, description="Build in caliper support (Instrumentor Interface)"
)
variant(
"likwid", default=False, description="Build in likwid support (Instrumentor Interface)"
)
# Build with `ninja` instead of `make`
generator("ninja")
depends_on("benchmark", type=("build", "test"))
depends_on("blas")
depends_on("boost", type="build")
depends_on("caliper", when="+caliper")
depends_on("easyloggingpp", when="~bundle")
depends_on("gmsh", when="+distmesh")
depends_on("lapack", when="+lapack")
depends_on("lcov", when="+coverage", type="build")
depends_on("likwid", when="+likwid")
depends_on("metis+int64")
depends_on("mpi", when="+mpi")
depends_on("omega-h+gmsh+mpi", when="~bundle+distmesh")
depends_on("petsc~debug+int64+mpi", when="+petsc+mpi")
depends_on("petsc~debug+int64~mpi", when="+petsc~mpi")
depends_on("pkgconfig", type="build")
depends_on("py-cython")
depends_on("py-gcovr", when="+coverage", type="build")
depends_on("py-h5py", type=("build", "test", "run"))
depends_on("py-matplotlib", type=("build", "test"))
depends_on("py-mpi4py", when="+distmesh", type=("build", "test", "run"))
depends_on("py-numpy", type=("build", "test", "run"))
depends_on("py-scipy", type=("build", "test", "run"))
depends_on("python", type=("build", "test", "run"))
depends_on("random123", when="~bundle")
depends_on("sundials@:2.99.99+int64", when="~bundle")
patch("for_aarch64.patch", when="target=aarch64:")
def patch(self):
# easylogging requires compilation by
# its dependents: splice in disabling all errors
filter_file(r"(-Wno-double-promotion)", r"-Wno-error \1", "src/steps/util/CMakeLists.txt")
def cmake_args(self):
args = [
self.define("BLAS_LIBRARIES", self.spec["blas"].libs.joined(";")),
self.define("PYTHON_EXECUTABLE", self.spec["python"].command),
self.define("STEPS_INSTALL_PYTHON_DEPS", False),
self.define_from_variant("BUILD_STOCHASTIC_TESTS", "stochtests"),
self.define_from_variant("BUILD_TESTING", "codechecks"),
self.define_from_variant("ENABLE_CODECOVERAGE", "coverage"),
self.define_from_variant("STEPS_ENABLE_ERROR_ON_WARNING", "codechecks"),
self.define_from_variant("STEPS_TEST_FORMATTING", "codechecks"),
self.define_from_variant("STEPS_USE_CALIPER_PROFILING", "caliper"),
self.define_from_variant("STEPS_USE_DIST_MESH", "distmesh"),
self.define_from_variant("STEPS_USE_LIKWID_PROFILING", "likwid"),
self.define_from_variant("USE_BDSYSTEM_LAPACK", "lapack"),
self.define_from_variant("USE_MPI", "mpi"),
self.define_from_variant("USE_PETSC", "petsc"),
]
args.extend(
[
self.define_from_variant(f"USE_BUNDLE_{bundle}", "bundle")
for bundle in ["EASYLOGGINGPP", "OMEGA_H", "RANDOM123", "SUNDIALS", "SUPERLU_DIST"]
]
)
return args
@property
def build_targets(self):
targets = []
if "+coverage" in self.spec:
if self.compiler.name != "gcc":
raise ValueError(
"Package " + self.name + " build with coverage enabled requires GCC to build"
)
targets = [
"CTEST_OUTPUT_ON_FAILURE=1",
"all", # build
"coverage_init", # initialize coverage counters
"test", # run tests suite
"coverage", # collect coverage counters and build reports
]
return targets
def setup_run_environment(self, env):
# This recipe exposes a Python package from a C++ CMake project.
# This hook is required to reproduce what Spack PythonPackage does.
env.prepend_path("PYTHONPATH", self.prefix)
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