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##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Steps(CMakePackage):
"""STochastic Engine for Pathway Simulation"""
homepage = "https://groups.oist.jp/cnu/software"
git = "https://github.com/CNS-OIST/STEPS.git"
version("3.3.0", submodules=True)
version("3.2.0", submodules=True)
version("develop", branch="master", submodules=True)
variant("native", default=True, description="Generate non-portable arch-specific code")
variant("lapack", default=False, description="Use new BDSystem/Lapack code for E-Field solver")
variant("petsc", default=False, description="Use PETSc library for parallel E-Field solver")
variant("mpi", default=True, description="Use MPI for parallel solvers")
depends_on("blas")
depends_on("lapack", when="+lapack")
depends_on("mpi", when="+mpi")
depends_on("petsc~debug+int64", when="+petsc")
depends_on("python")
depends_on("py-cython")
def cmake_args(self):
args = []
spec = self.spec
if "+native" in spec:
args.append("-DTARGET_NATIVE_ARCH:BOOL=True")
else:
args.append("-DTARGET_NATIVE_ARCH:BOOL=False")
if "+lapack" in spec:
args.append("-DUSE_BDSYSTEM_LAPACK:BOOL=True")
else:
args.append("-DUSE_BDSYSTEM_LAPACK:BOOL=False")
if "+petsc" in spec:
args.append("-DUSE_PETSC:BOOL=True")
else:
args.append("-DUSE_PETSC:BOOL=False")
if "+mpi" in spec:
args.append("-DUSE_MPI:BOOL=True")
else:
args.append("-DUSE_MPI:BOOL=False")
args.append('-DBLAS_LIBRARIES=' + spec['blas'].libs.joined(";"))
return args
def setup_environment(self, spack_env, run_env):
# This recipe exposes a Python package from a C++ CMake project.
# This hook is required to reproduce what Spack PythonPackage does.
run_env.prepend_path('PYTHONPATH', self.prefix)
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