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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import spack.build_systems.autotools
import spack.build_systems.cmake
from spack.package import *
class Sz(CMakePackage, AutotoolsPackage):
"""Error-bounded Lossy Compressor for HPC Data"""
homepage = "https://szcompressor.org"
url = "https://github.com/szcompressor/SZ/releases/download/v2.1.11/SZ-2.1.11.tar.gz"
git = "https://github.com/szcompressor/sz"
maintainers("disheng222", "robertu94")
tags = ["e4s"]
version("master", branch="master")
version("2.1.12.5", sha256="32a820daf6019156a777300389d2392e4498a5c9daffce7be754cd0a5ba8729c")
version("2.1.12.4", sha256="4ae242e8821a96b7a4571bb5df6a3c78742d375f80cccbd5d46c4bac255b3c08")
version("2.1.12.2", sha256="427e263e1fed1b0a56e13e0aff8e6a19c6d78d5f35dd16856876c70ab6066dc6")
version("2.1.12", sha256="3712b2cd7170d1511569e48a208f02dfb72ecd7ad053c321e2880b9083e150de")
version("2.1.11.1", sha256="e6fa5c969b012782b1e5e9fbd1cd7d1c0ace908d9ec982e78b2910ec5c2161ac")
version("2.1.11", sha256="85b8ef99344a3317ba9ee63ca4b9d99a51d1832d4d8880e01c7c56b3a69cacc9")
version(
"2.1.10",
sha256="3aba7619bdb5412218f162696f946c9d3a3df5acf128ddc685b21e45c11f6ae3",
url="https://github.com/szcompressor/SZ/releases/download/v2.1.10/sz-2.1.10.tar.gz",
)
version("2.1.9", sha256="491724ff1c0eaaab5e1a7a28e36aba6da9dcbeddb29d8d21a6d1388383d4891e")
version("2.1.8.3", sha256="be94f3c8ab03d6849c59a98e0ebf80816a6b8d07a1d762a4b285498acb2f3871")
version("2.1.8.1", sha256="a27c9c9da16c9c4232c54813ba79178945f47609043f11501d49a171e47d3f46")
version("2.1.8.0", sha256="8d6bceb59a03d52e601e29d9b35c21b146c248abae352f9a4828e91d8d26aa24")
version("2.0.2.0", sha256="176c65b421bdec8e91010ffbc9c7bf7852c799972101d6b66d2a30d9702e59b0")
version("1.4.13.5", sha256="b5e37bf3c377833eed0a7ca0471333c96cd2a82863abfc73893561aaba5f18b9")
version("1.4.13.4", sha256="c99b95793c48469cac60e6cf82f921babf732ca8c50545a719e794886289432b")
version("1.4.13.3", sha256="9d80390f09816bf01b7a817e07339030d596026b00179275616af55ed3c1af98")
version("1.4.13.2", sha256="bc45329bf54876ed0f721998940855dbd5fda54379ef35dad8463325488ea4c6")
version("1.4.13.0", sha256="baaa7fa740a47e152c319b8d7b9a69fe96b4fea5360621cdc96cb250635f946f")
version("1.4.12.3", sha256="c1413e1c260fac7a48cb11c6dd705730525f134b9f9b244af59885d564ac7a6f")
version("1.4.12.1", sha256="98289d75481a6e407e4027b5e23013ae83b4aed88b3f150327ea711322cd54b6")
version("1.4.11.1", sha256="6cbc5b233a3663a166055f1874f17c96ba29aa5a496d352707ab508288baa65c")
version("1.4.11.0", sha256="52ff03c688522ebe085caa7a5f73ace28d8eaf0eb9a161a34a9d90cc5672ff8c")
version("1.4.10.0", sha256="cf23cf1ffd7c69c3d3128ae9c356b6acdc03a38f92c02db5d9bfc04f3fabc506")
version("1.4.9.2", sha256="9dc785274d068d04c2836955fc93518a9797bfd409b46fea5733294b7c7c18f8")
build_system(
conditional("autotools", when="@:2.1.8.0"),
conditional("cmake", when="@2.1.8.1:"),
default="cmake",
)
variant("python", default=False, description="builds the python wrapper")
variant("netcdf", default=False, description="build the netcdf reader")
variant("hdf5", default=False, description="build the hdf5 filter")
variant("pastri", default=False, description="build the pastri mode")
variant("time_compression", default=False, description="build the time based compression mode")
variant("random_access", default=False, description="build the random access compression mode")
variant("fortran", default=False, description="Enable fortran compilation")
variant("shared", default=True, description="build shared versions of the libraries")
variant("stats", default=False, description="build profiling statistics for compression")
# Part of latest sources don't support -O3 optimization
# with Fujitsu compiler.
patch("fix_optimization.patch", when="@2.0.2.0:%fj")
depends_on("zlib-api")
depends_on("zstd")
extends("python", when="+python")
depends_on("python@3:", when="+python", type=("build", "link", "run"))
depends_on("swig@3.12:", when="+python", type="build")
depends_on("py-numpy", when="+python", type=("build", "link", "run"))
depends_on("hdf5", when="+hdf5")
depends_on("netcdf-c", when="+netcdf")
depends_on("cmake@3.13:", type="build")
depends_on("cunit", type="test")
conflicts("%clang@15:", when="@:2.1.12.4+hdf5")
patch("ctags-only-if-requested.patch", when="@2.1.8.1:2.1.8.3")
def flag_handler(self, name, flags):
if name == "cflags":
if self.spec.satisfies("%oneapi"):
flags.append("-Wno-error=implicit-function-declaration")
return (flags, None, None)
def setup_run_environment(self, env):
if "+hdf5" in self.spec:
env.prepend_path("HDF5_PLUGIN_PATH", self.prefix.lib64)
def _test_2d_float(self):
"""This test performs simple 2D compression/decompression (float)"""
test_data_dir = self.test_suite.current_test_data_dir
filename = "testfloat_8_8_128.dat"
orifile = test_data_dir.join(filename)
exe = "sz"
reason = "testing 2D compression of {0}".format(exe)
options = ["-z", "-f", "-i", orifile, "-M", "REL", "-R", "1E-3", "-2", "8", "1024"]
self.run_test(
exe,
options,
[],
installed=True,
purpose=reason,
skip_missing=True,
work_dir=test_data_dir,
)
filename = "testfloat_8_8_128.dat.sz"
decfile = test_data_dir.join(filename)
reason = "testing 2D decompression of {0}".format(exe)
options = ["-x", "-f", "-i", orifile, "-s", decfile, "-2", "8", "1024", "-a"]
self.run_test(
exe,
options,
[],
installed=True,
purpose=reason,
skip_missing=True,
work_dir=test_data_dir,
)
def _test_3d_float(self):
"""This test performs simple 3D compression/decompression (float)"""
test_data_dir = self.test_suite.current_test_data_dir
filename = "testfloat_8_8_128.dat"
orifile = test_data_dir.join(filename)
exe = "sz"
reason = "testing 3D compression of {0}".format(exe)
options = ["-z", "-f", "-i", orifile, "-M", "REL", "-R", "1E-3", "-3", "8", "8", "128"]
self.run_test(
exe,
options,
[],
installed=True,
purpose=reason,
skip_missing=True,
work_dir=test_data_dir,
)
filename = "testfloat_8_8_128.dat.sz"
decfile = test_data_dir.join(filename)
reason = "testing 3D decompression of {0}".format(exe)
options = ["-x", "-f", "-i", orifile, "-s", decfile, "-3", "8", "8", "128", "-a"]
self.run_test(
exe,
options,
[],
installed=True,
purpose=reason,
skip_missing=True,
work_dir=test_data_dir,
)
def test(self):
"""Perform smoke tests on the installed package"""
# run 2D compression and decompression (float)
self._test_2d_float()
# run 3D compression and decompression (float)
self._test_3d_float()
class AutotoolsBuilder(spack.build_systems.autotools.AutotoolsBuilder):
build_directory = "."
def configure_args(self):
return self.enable_or_disable("fortran")
@run_before("build")
def make_clean(self):
# at least the v2.0.2.0 tarball contains object files
# which need to be cleaned out
make("clean")
class CMakeBuilder(spack.build_systems.cmake.CMakeBuilder):
def cmake_args(self):
result = [
self.define_from_variant("BUILD_NETCDF_READER", "netcdf"),
self.define_from_variant("BUILD_HDF5_FILTER", "hdf5"),
self.define_from_variant("BUILD_PASTRI", "pastri"),
self.define_from_variant("BUILD_TIMECPR", "time_compression"),
self.define_from_variant("BUILD_RANDOMACCESS", "random_access"),
self.define_from_variant("BUILD_FORTRAN", "fortran"),
self.define_from_variant("BUILD_SHARED_LIBS", "shared"),
self.define_from_variant("BUILD_STATS", "stats"),
self.define("BUILD_TESTS", self.pkg.run_tests),
self.define_from_variant("BUILD_PYTHON_WRAPPER", "python"),
]
if "+python" in self.spec:
result.append(self.define("SZ_PYTHON_SITELIB", python_platlib))
return result
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