1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
|
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Tabix(MakefilePackage):
"""Generic indexer for TAB-delimited genome position files"""
homepage = "https://github.com/samtools/tabix"
git = "https://github.com/samtools/tabix.git"
version("2013-12-16", commit="1ae158ac79b459f5feeed7490c67519b14ce9f35")
depends_on("perl", type=("build", "run"))
depends_on("python", type=("build", "run"))
depends_on("zlib-api", type="link")
def install(self, spec, prefix):
mkdirp(prefix.bin)
mkdirp(prefix.share.man.man1)
install("tabix", prefix.bin)
install("bgzip", prefix.bin)
install("tabix.py", prefix.bin)
install("tabix.1", prefix.share.man.man1)
install("tabix.tex", prefix.share)
install("TabixReader.java", prefix.bin)
install("libtabix.a", prefix.lib)
install_tree("perl", prefix.perl)
install_tree("python", prefix.python)
|
