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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Tassel(Package):
"""TASSEL is a software package to evaluate traits associations,
evolutionary patterns, and linkage disequilibrium."""
homepage = "https://www.maizegenetics.net/tassel"
git = "https://bitbucket.org/tasseladmin/tassel-5-standalone.git"
maintainers("snehring")
version("5.2.86", commit="6557864512a89932710b9f53c6005a35ad6c526e")
version("5.2.39", commit="ae96ae75c3c9a9e8026140b6c775fa4685bdf531")
version(
"3.0.174",
commit="612a92c0f677d6ec040c17e146671974a3cdc2da",
git="git://git.code.sf.net/p/tassel/tassel3-standalone.git",
)
depends_on("java", type=("build", "run"))
depends_on("perl", type=("build", "run"))
def install(self, spec, prefix):
install_tree(".", prefix.bin)
def setup_run_environment(self, env):
env.prepend_path("CLASSPATH", self.prefix.bin.lib)
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