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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Tcoffee(MakefilePackage):
"""T-Coffee is a multiple sequence alignment program."""
homepage = "http://www.tcoffee.org/"
git = "https://github.com/cbcrg/tcoffee.git"
version('2017-08-17', commit='f389b558e91d0f82e7db934d9a79ce285f853a71')
depends_on('perl', type=('build', 'run'))
depends_on('blast-plus')
depends_on('dialign-tx')
depends_on('viennarna')
depends_on('clustalw')
depends_on('tmalign')
depends_on('muscle')
depends_on('mafft')
depends_on('pcma')
depends_on('poamsa')
depends_on('probconsrna')
build_directory = 'compile'
def build(self, spec, prefix):
with working_dir(self.build_directory):
make('t_coffee')
def install(self, spec, prefix):
mkdirp(prefix.bin)
with working_dir(self.build_directory):
install('t_coffee', prefix.bin)
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