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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Tppred(Package):
"""TPPRED is a software package for the prediction of mitochondrial
targeting peptides from protein primary sequence."""
homepage = "https://tppred2.biocomp.unibo.it/tppred2/default/software"
url = "http://biocomp.unibo.it/savojard/tppred2.tar.gz"
version('2.0', sha256='0e180d5ce1f0bccfdbc3dbf9981b3fbe2101c85491c58c58c88856861688a4f5')
depends_on('python@2.7:2', type='run')
depends_on('py-scikit-learn@0.13.1', type='run')
depends_on('emboss')
def url_for_version(self, version):
url = 'http://biocomp.unibo.it/savojard/tppred{0}.tar.gz'
return url.format(version.up_to(1))
def install(self, spec, prefix):
mkdirp(prefix.bin)
with working_dir('bin'):
install('tppred2.py', prefix.bin)
install_tree('data', prefix.data)
install_tree('example', prefix.example)
install_tree('tppred2modules', prefix.modules)
def setup_run_environment(self, env):
env.set('TPPRED_ROOT', self.prefix)
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