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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Transabyss(Package):
"""De novo assembly of RNAseq data using ABySS"""
homepage = "https://www.bcgsc.ca/platform/bioinfo/software/trans-abyss"
url = "https://www.bcgsc.ca/platform/bioinfo/software/trans-abyss/releases/1.5.5/transabyss-1.5.5.zip"
version("1.5.5", sha256="7804961c13296c587a1b22180dd3f02091a4494cbbd04fc33c2060599caadb0b")
depends_on("abyss@1.5.2")
depends_on("python@2.7.6:", type=("build", "run"))
depends_on("py-python-igraph@0.7.0:", type=("build", "run"))
depends_on("blat")
def install(self, spec, prefix):
install("transabyss", prefix)
install("transabyss-merge", prefix)
install_tree("bin", prefix.bin)
install_tree("utilities", prefix.utilities)
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