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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Transabyss(Package):
"""De novo assembly of RNAseq data using ABySS"""
homepage = "https://www.bcgsc.ca/platform/bioinfo/software/trans-abyss"
url = "http://www.bcgsc.ca/platform/bioinfo/software/trans-abyss/releases/1.5.5/transabyss-1.5.5.zip"
version('1.5.5', sha256='7804961c13296c587a1b22180dd3f02091a4494cbbd04fc33c2060599caadb0b')
depends_on('abyss@1.5.2')
depends_on('python@2.7.6:', type=('build', 'run'))
depends_on('py-python-igraph@0.7.0:', type=('build', 'run'))
depends_on('blat')
def install(self, spec, prefix):
install('transabyss', prefix)
install('transabyss-merge', prefix)
install_tree('bin', prefix.bin)
install_tree('utilities', prefix.utilities)
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