blob: b30f368933814981e05200ca371094881bacbd7d (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
|
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Transabyss(Package):
"""De novo assembly of RNAseq data using ABySS"""
homepage = "http://www.bcgsc.ca/platform/bioinfo/software/trans-abyss"
url = "http://www.bcgsc.ca/platform/bioinfo/software/trans-abyss/releases/1.5.5/transabyss-1.5.5.zip"
version('1.5.5', '9ebe0394243006f167135cac4df9bee6')
depends_on('abyss@1.5.2')
depends_on('python@2.7.6:', type=('build', 'run'))
depends_on('py-igraph@0.7.0:', type=('build', 'run'))
depends_on('blat')
def install(self, spec, prefix):
install('transabyss', prefix)
install('transabyss-merge', prefix)
install_tree('bin', prefix.bin)
install_tree('utilities', prefix.utilities)
|
