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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class TrnascanSe(AutotoolsPackage):
"""Seaching for tRNA genes in genomic sequence"""
homepage = "http://lowelab.ucsc.edu/tRNAscan-SE/"
url = "http://trna.ucsc.edu/software/trnascan-se-2.0.0.tar.gz"
version("2.0.0", sha256="0dde1c07142e4bf77b21d53ddf3eeb1ef8c52248005a42323d13f8d7c798100c")
depends_on("infernal@1.1.2", type="run", when="@2.0.0")
def patch(self):
filter_file(
"infernal_dir: {bin_dir}",
"infernal_dir: %s" % self.spec["infernal"].prefix.bin,
"tRNAscan-SE.conf.src",
string=True,
)
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