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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Uqtk(CMakePackage):
"""Sandia Uncertainty Quantification Toolkit. The UQ Toolkit (UQTk) is a
collection of libraries and tools for the quantification of uncertainty
in numerical model predictions"""
homepage = "https://www.sandia.gov/UQToolkit/"
url = "https://github.com/sandialabs/UQTk/archive/v3.0.4.tar.gz"
git = "https://github.com/sandialabs/UQTk.git"
maintainers("omsai", "bjdebus")
version("master", branch="master")
version("3.1.3", sha256="37840630357c4f407191d7a4276dfe219df35d54d288d68fea1746dfcbc3c5c1")
version("3.1.2", sha256="57ce0cea709777cbefb46f3bd86a0996a0ed5f50fc54cc297599df6e4bb9ab83")
version("3.1.0", sha256="56ecd3d13bdd908d568e9560dc52cc0f66d7bdcdbe64ab2dd0147a7cf1734f97")
version("3.0.4", sha256="0a72856438134bb571fd328d1d30ce3d0d7aead32eda9b7fb6e436a27d546d2e")
variant(
"python", default=True, description="Compile Python scripts and interface to C++ libraries"
)
depends_on("expat")
depends_on("sundials@6:", when="@3.1.3:")
depends_on("sundials@:5", when="@3.1.0:3.1.2")
depends_on("blas", when="@3.1.0:")
depends_on("lapack", when="@3.1.0:")
extends("python", when="+python")
depends_on("py-numpy", type=("build", "run"), when="+python")
depends_on("py-scipy", type=("build", "run"), when="+python")
depends_on("py-matplotlib", type=("build", "run"), when="+python")
depends_on("py-pymc3", type=("build", "run"), when="+python")
depends_on("swig", type="build", when="@:3.1.0 +python")
# The two patches for 3.1.0 fail with 3.1.2, therefore convert the patches
# to more versatile and reliable sed-like filter_file substitutions.
def patch(self):
# These patches affect many CMakeLists.txt files.
cmakelists = find(".", "CMakeLists.txt")
# All patched lines start with "target_link_libraries";
# case-insensitive.
tll = (
r"(.*[tT][aA][rR][gG][eE][tT]_[lL][iI][nN][kK]_"
r"[lL][iI][bB][rR][aA][rR][iI][eE][sS].+)"
)
# Modify the process of directly specifying blas/lapack as the library
# name.
if "@3.1.0:3.1.2" in self.spec:
lp = r"\${LAPACK_LIBRARIES}"
bl = r"\${BLAS_LIBRARIES}"
# Replace duplicate entries.
filter_file(rf"{tll}lapack ({lp}.+)", r"\1 \2", *cmakelists)
filter_file(rf"{tll}blas ({lp}.+)", r"\1 \2", *cmakelists)
# Replace with the variable.
filter_file(rf"{tll}lapack(.+)", rf"\1{lp}\2", *cmakelists)
filter_file(rf"{tll}blas(.+)", rf"\1{bl}\2", *cmakelists)
# Do not link the gfortran library for the Fujitsu compiler.
if "@3.1.0:%fj" in self.spec:
filter_file(rf"{tll} gfortran(.+stdc[+][+].+)", r"\1\2", *cmakelists)
@when("@3.1.0:")
def cmake_args(self):
spec = self.spec
# Make sure we use Spack's blas/lapack:
lapack_libs = spec["lapack"].libs.joined(";")
blas_libs = spec["blas"].libs.joined(";")
args = [
self.define("CMAKE_SUNDIALS_DIR", spec["sundials"].prefix),
self.define("LAPACK_LIBRARIES", lapack_libs),
self.define("BLAS_LIBRARIES", blas_libs),
self.define_from_variant("PyUQTk", "python"),
]
return args
def setup_run_environment(self, env):
if "+python" in self.spec:
env.prepend_path("PYTHONPATH", self.prefix)
env.prepend_path("PYTHONPATH", "{0}/PyUQTk".format(self.prefix))
env.prepend_path("LD_LIBRARY_PATH", "{0}/PyUQTk/".format(self.prefix))
env.set("UQTK_SRC", self.prefix)
env.set("UQTK_INS", self.prefix)
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