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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
import glob
class Vardictjava(Package):
"""VarDictJava is a variant discovery program written in Java.
It is a partial Java port of VarDict variant caller."""
homepage = "https://github.com/AstraZeneca-NGS/VarDictJava"
url = "https://github.com/AstraZeneca-NGS/VarDictJava/releases/download/v1.5.1/VarDict-1.5.1.tar"
version('1.5.1', '8c0387bcc1f7dc696b04e926c48b27e6')
version('1.4.4', '6b2d7e1e5502b875760fc9938a0fe5e0')
depends_on('java@8:', type='run')
def install(self, spec, prefix):
mkdirp(prefix.bin)
install('bin/VarDict', prefix.bin)
mkdirp(prefix.lib)
files = [x for x in glob.glob("lib/*jar")]
for f in files:
install(f, prefix.lib)
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