1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
|
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Viennarna(AutotoolsPackage):
"""The ViennaRNA Package consists of a C code library and several
stand-alone programs for the prediction and comparison of RNA secondary
structures.
"""
homepage = "https://www.tbi.univie.ac.at/RNA/"
url = "https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_4_x/ViennaRNA-2.4.3.tar.gz"
version('2.4.3', sha256='4cda6e22029b34bb9f5375181562f69e4a780a89ead50fe952891835e9933ac0')
version('2.3.5', sha256='26b62a00da21bc5597b580ab8fef4e624234ec446d7d3cb0ce22803a5d7074ca')
variant('sse', default=True, description='Enable SSE in order to substantially speed up execution')
variant('perl', default=True, description='Build ViennaRNA with Perl interface')
variant('python', default=True, description='Build ViennaRNA with Python interface')
depends_on('perl', type=('build', 'run'))
depends_on('python', type=('build', 'run'))
depends_on('libsvm')
depends_on('gsl')
def url_for_version(self, version):
url = 'https://www.tbi.univie.ac.at/RNA/download/sourcecode/{0}_x/ViennaRNA-{1}.tar.gz'
return url.format(version.up_to(2).underscored, version)
def configure_args(self):
args = self.enable_or_disable('sse')
args += self.with_or_without('python')
args += self.with_or_without('perl')
if self.spec.satisfies('@2.4.3:'):
args.append('--without-swig')
if 'python@3:' in self.spec:
args.append('--with-python3')
return args
|
