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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Vifi(Package):
"""ViFi is a collection of python and perl scripts
for identifying viral integration and fusion mRNA reads from NGS data."""
homepage = "https://github.com/namphuon/ViFi"
git = "https://github.com/namphuon/ViFi.git"
license("GPL-3.0-only")
version("master", branch="master")
depends_on("perl", type="run")
depends_on("python", type="run")
depends_on("py-pysam", type="run")
depends_on("hmmer", type="run")
def install(self, spec, prefix):
install_tree("scripts", prefix.bin)
install_tree("lib", prefix.lib)
install_tree("test", prefix.test)
install("LICENSE", prefix)
install("README.md", prefix)
install("TUTORIAL.md", prefix)
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