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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Wgsim(Package):
"""Wgsim is a small tool for simulating sequence reads from a reference
genome.
It is able to simulate diploid genomes with SNPs and insertion/deletion
(INDEL) polymorphisms, and simulate reads with uniform substitution
sequencing errors. It does not generate INDEL sequencing errors, but this
can be partly compensated by simulating INDEL polymorphisms."""
homepage = "https://github.com/lh3/wgsim"
git = "https://github.com/lh3/wgsim.git"
version('2011.10.17', commit='a12da3375ff3b51a5594d4b6fa35591173ecc229')
depends_on('zlib')
def install(self, spec, prefix):
cc = Executable(spack_cc)
cc('-g', '-O2', '-Wall', '-o', 'wgsim', 'wgsim.c', '-lz', '-lm')
install_tree(self.stage.source_path, prefix.bin)
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