1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
|
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Yambo(AutotoolsPackage):
"""Yambo is a FORTRAN/C code for Many-Body calculations in solid
state and molecular physics.
Yambo relies on the Kohn-Sham wavefunctions generated by two DFT
public codes: abinit, and PWscf. The code was originally developed
in the Condensed Matter Theoretical Group of the Physics Department
at the University of Rome "Tor Vergata" by Andrea Marini. Previous
to its release under the GPL license, yambo was known as SELF.
"""
homepage = "http://www.yambo-code.org/index.php"
url = "https://github.com/yambo-code/yambo/archive/4.2.2.tar.gz"
license("GPL-2.0-or-later")
version("5.2.1", sha256="0ac362854313927d75bbf87be98ff58447f3805f79724c38dc79df07f03a7046")
version("5.1.1", sha256="c85036ca60507e627c47b6c6aee8241830349e88110e1ce9132ef03ab2c4e9f6")
version("4.2.2", sha256="86b4ebe679387233266aba49948246c85a32b1e6840d024f162962bd0112448c")
version("4.2.1", sha256="8ccd0ca75cc32d9266d4a37edd2a7396cf5038f3a68be07c0f0f77d1afc72bdc")
version("4.2.0", sha256="9f78c4237ff363ff4e9ea5eeea671b6fff783d9a6078cc31b0b1abeb1f040f4d")
variant("dp", default=False, description="Enable double precision")
variant(
"profile",
values=any_combination_of("time", "memory"),
description="Activate profiling of specific sections",
)
variant(
"io",
values=any_combination_of("iotk", "etsf-io"),
description="Activate support for different io formats (requires network access)",
)
# MPI + OpenMP parallelism
variant("mpi", default=True, description="Enable MPI support")
variant("openmp", default=False, description="Enable OpenMP support")
depends_on("blas")
depends_on("lapack")
# MPI dependencies are forced, until we have proper forwarding of variants
#
# Note that yambo is used as an application, and not linked as a library,
# thus there will be no case where another package pulls-in e.g.
# netcdf-c+mpi and wants to depend on yambo~mpi.
depends_on("mpi", when="+mpi")
depends_on("netcdf-c+mpi", when="+mpi")
depends_on("hdf5+mpi", when="+mpi")
depends_on("fftw+mpi", when="+mpi")
depends_on("scalapack", when="+mpi")
depends_on("netcdf-c~mpi", when="~mpi")
depends_on("hdf5~mpi", when="~mpi")
depends_on("fftw~mpi", when="~mpi")
depends_on("hdf5+fortran")
depends_on("netcdf-c")
depends_on("netcdf-fortran")
depends_on("libxc@2.0.3:")
build_targets = ["all"]
parallel = False
# The configure in the package has the string 'cat config/report'
# hard-coded, which causes a failure at configure time due to the
# current working directory in Spack. Fix this by using the absolute
# path to the file.
@run_before("configure")
def filter_configure(self):
report_abspath = join_path(self.build_directory, "config", "report")
filter_file("config/report", report_abspath, "configure")
def enable_or_disable_time(self, activated):
return "--enable-time-profile" if activated else "--disable-time-profile"
def enable_or_disable_memory(self, activated):
return "--enable-memory-profile" if activated else "--disable-memory-profile"
def enable_or_disable_openmp(self, activated):
return "--enable-open-mp" if activated else "--disable-open-mp"
def configure_args(self):
args = [
# As of version 4.2.1 there are hard-coded paths that make
# the build process fail if the target prefix is not the
# configure directory
f"--prefix={self.stage.source_path}",
"--disable-keep-objects",
"--with-editor=none",
]
spec = self.spec
# Double precision
args.extend(self.enable_or_disable("dp"))
# Application profiling
args.extend(self.enable_or_disable("profile"))
# MPI + threading
args.extend(self.enable_or_disable("mpi"))
args.extend(self.enable_or_disable("openmp"))
# LAPACK
if spec.satisfies("+mpi"):
args.append(
"--with-scalapack-libs={0}".format(
spec["scalapack"].libs + spec["lapack"].libs + spec["blas"].libs
)
)
args.extend(
[f"--with-blas-libs={spec['blas'].libs}", f"--with-lapack-libs={spec['lapack'].libs}"]
)
# Netcdf
args.extend(
[
"--enable-netcdf-hdf5",
"--enable-hdf5-compression",
f"--with-hdf5-libs={spec['hdf5'].libs}",
f"--with-netcdf-path={spec['netcdf-c'].prefix}",
f"--with-netcdff-path={spec['netcdf-fortran'].prefix}",
]
)
args.extend(self.enable_or_disable("io"))
# Other dependencies
args.append(f"--with-fft-path={spec['fftw'].prefix}")
args.append(f"--with-libxc-path={spec['libxc'].prefix}")
return args
def install(self, spec, prefix):
# As of version 4.2.1 an 'install' target is advertized,
# but not present
install_tree("bin", prefix.bin)
install_tree("lib", prefix.lib)
install_tree("include", prefix.include)
install_tree("driver", prefix.driver)
|
