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| author | Audrey Thoma <las_thoma15@iastate.edu> | 2017-07-21 02:17:55 -0500 |
|---|---|---|
| committer | Massimiliano Culpo <massimiliano.culpo@googlemail.com> | 2017-07-21 09:17:55 +0200 |
| commit | 51ad3a622e3fa8a70fcd74cd8d7280ae383b9c9d (patch) | |
| tree | 3f48f309a5f11e27b827a806b2fc3c18c41ad45f | |
| parent | 7afce8d8cc27747934c218eff2a389a65f98e966 (diff) | |
| download | spack-51ad3a622e3fa8a70fcd74cd8d7280ae383b9c9d.tar.gz spack-51ad3a622e3fa8a70fcd74cd8d7280ae383b9c9d.tar.bz2 spack-51ad3a622e3fa8a70fcd74cd8d7280ae383b9c9d.tar.xz spack-51ad3a622e3fa8a70fcd74cd8d7280ae383b9c9d.zip | |
salmon: new package (#4833)
| -rw-r--r-- | var/spack/repos/builtin/packages/salmon/package.py | 41 |
1 files changed, 41 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/salmon/package.py b/var/spack/repos/builtin/packages/salmon/package.py new file mode 100644 index 0000000000..413eb9aebe --- /dev/null +++ b/var/spack/repos/builtin/packages/salmon/package.py @@ -0,0 +1,41 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Salmon(CMakePackage): + """Salmon is a tool for quantifying the expression of transcripts using + RNA-seq data.""" + + homepage = "http://combine-lab.github.io/salmon/" + url = "https://github.com/COMBINE-lab/salmon/archive/v0.8.2.tar.gz" + + version('0.8.2', 'ee512697bc44b13661a16d4e14cf0a00') + + depends_on('boost') + + def cmake_args(self): + args = ['-DBOOST_ROOT=%s' % self.spec['boost'].prefix] + return args |