perl-bio-ensembl-funcgen: new package (#44508)

* Adding the perl-bio-ensembl-funcgen package

* Update package.py

* Update package.py

1 files changed, 37 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/perl-bio-ensembl-funcgen/package.py b/var/spack/repos/builtin/packages/perl-bio-ensembl-funcgen/package.py
new file mode 100644
index 0000000000..bede5949f6
--- /dev/null
+++ b/var/spack/repos/builtin/packages/perl-bio-ensembl-funcgen/package.py
@@ -0,0 +1,37 @@
+# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+from spack.package import *
+
+
+class PerlBioEnsemblFuncgen(Package):
+    """Ensembl Funcgen Perl API and SQL schema."""
+
+    homepage = "http://ensembl.org/info/docs/api/funcgen/index.html"
+    url = "https://github.com/Ensembl/ensembl-funcgen/archive/release/111.zip"
+
+    maintainers("teaguesterling")
+
+    license("APACHE-2.0", checked_by="teaguesterling")
+
+    version("112", sha256="d7398921779a6865b5e2f0269d51d268f9b8cd96e4ca3577c88e6f34593e683d")
+    version("111", sha256="67b1b7d6efde9e8be7b4ef73c54c0b5e7e3eadcd590a94bc980984514ef746d0")
+    version("110", sha256="c9e85a423a8c8653741aed799aea9762fa1dfb301f50dc11d291925e81d7aeee")
+
+    extends("perl")
+
+    depends_on("perl-role-tiny", type=("build", "run"))
+    depends_on("perl-bio-ensembl")
+
+    variant("sql", default=False, description="Install SQL files")
+    variant("scripts", default=False, description="Install scripts")
+    variant("templates", default=False, description="Install templates")
+
+    def install(self, spec, prefix):
+        install_tree("modules", prefix.lib.perl5)
+        mkdirp(prefix.share.ensembl.variation)
+        for extra in ["sql", "scripts", "templates"]:
+            if spec.satisfies(f"+{extra}"):
+                target = join_path(prefix.share.ensembl, extra)
+                install_tree(extra, target)