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authorAudrey Thoma <las_thoma15@iastate.edu>2017-08-10 20:04:10 -0500
committerAdam J. Stewart <ajstewart426@gmail.com>2017-08-10 20:04:10 -0500
commit637f72a8fed04ce92a7fe983496a39eed3e6c17a (patch)
tree1a2ab5f7049627814b26af7372b4c6ed83d816d8
parent967370aa0b5a673403aca53cd12837c12b693e1c (diff)
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fimpute: new package (#5060)
-rw-r--r--var/spack/repos/builtin/packages/fimpute/package.py40
1 files changed, 40 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/fimpute/package.py b/var/spack/repos/builtin/packages/fimpute/package.py
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+++ b/var/spack/repos/builtin/packages/fimpute/package.py
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+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Fimpute(Package):
+ """FImpute uses an overlapping sliding window approach to efficiently
+ exploit relationships or haplotype similarities between target and
+ reference individuals."""
+
+ homepage = "http://www.aps.uoguelph.ca/~msargol/fimpute/"
+ url = "http://www.aps.uoguelph.ca/~msargol/fimpute/FImpute_Linux.zip"
+
+ version('2014-01', 'df934a25c76dabef7d7afcb5b8058d98')
+
+ def install(self, spec, prefix):
+ mkdirp(prefix.bin)
+ install('FImpute', prefix.bin)