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| author | dlkuehn <dkuehn@iastate.edu> | 2022-04-14 12:02:06 -0500 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2022-04-14 10:02:06 -0700 |
| commit | b09fb467f162e30903acf6ddc7a12a2969147b68 (patch) | |
| tree | d49f3cdb0dadf4f33490a44492f1375362cdd383 | |
| parent | dec3e31e60ccea41d20c87073bf723c382074f08 (diff) | |
| download | spack-b09fb467f162e30903acf6ddc7a12a2969147b68.tar.gz spack-b09fb467f162e30903acf6ddc7a12a2969147b68.tar.bz2 spack-b09fb467f162e30903acf6ddc7a12a2969147b68.tar.xz spack-b09fb467f162e30903acf6ddc7a12a2969147b68.zip | |
Package rna-seqc: Change jdk dependency to java (#30049)
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
| -rw-r--r-- | var/spack/repos/builtin/packages/rna-seqc/package.py | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/var/spack/repos/builtin/packages/rna-seqc/package.py b/var/spack/repos/builtin/packages/rna-seqc/package.py index c4d9b3b269..0fe64296ab 100644 --- a/var/spack/repos/builtin/packages/rna-seqc/package.py +++ b/var/spack/repos/builtin/packages/rna-seqc/package.py @@ -21,7 +21,7 @@ class RnaSeqc(Package): version('1.1.5', sha256='1da100182037f46c61f93a063083e3be579da2678b0441fbc3fc8b58120e52c9', expand=False) version('1.1.4', sha256='eac437061157036dddf496be8e05fe62b011fb95d34e9079c93ee4001710f1c6', expand=False) - depends_on('jdk@8:', type='run') + depends_on('java@8:', type='run') def install(self, spec, prefix): mkdirp(prefix.bin) @@ -37,7 +37,7 @@ class RnaSeqc(Package): # Munge the helper script to explicitly point to java and the # jar file. - java = self.spec['jdk'].prefix.bin.java + java = self.spec['java'].prefix.bin.java kwargs = {'ignore_absent': False, 'backup': False, 'string': False} filter_file('^java', java, script, **kwargs) filter_file('RNA-SeQC_v{0}.jar', join_path(prefix.bin, jar_file), |