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| author | Marco De La Pierre <marco.delapierre@gmail.com> | 2022-12-17 05:28:51 +0800 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2022-12-16 14:28:51 -0700 |
| commit | 1bf87dbb5d545d0f8b325c2118bfff91bd1cbc1f (patch) | |
| tree | 87c9ef6233a019050f90bc0a16723a3d9e96b85c /var/spack/repos/builtin/packages/py-refgenie/package.py | |
| parent | ffe527b141703fa8d9bf3c45b8c05a24b8f954ae (diff) | |
| download | spack-1bf87dbb5d545d0f8b325c2118bfff91bd1cbc1f.tar.gz spack-1bf87dbb5d545d0f8b325c2118bfff91bd1cbc1f.tar.bz2 spack-1bf87dbb5d545d0f8b325c2118bfff91bd1cbc1f.tar.xz spack-1bf87dbb5d545d0f8b325c2118bfff91bd1cbc1f.zip | |
Adding first bunch of recipes for dependencies of nf-core-tools (#34537)
* nextflow recipe: added latest stable version
* tower-cli recipe: added latest release
* recipes tower-agent and tower-cli renamed to nf-tower-agent and nf-tower-cli
* recipes nf-tower-agent and nf-tower-cli: small fix
* nf-core-tools recipe: added most py- dependencies
* nf-core-tools: recipe without galaxy-tool-util (for testing)
* fixed typos in py-yacman recipe
* fixed typos in py-pytest-workflow recipe
* fixed typo in nf-core-tools recipe
* fixed typos in py-yacman recipe
* fixes in recipes for py-questionary and py-url-normalize
* fixes to py-yacman recipe
* style fixes to py- packages that are dependencies to nf-core-tools
* fix in py-requests-cache recipe
* added missing dep in py-requests-cache recipe
* nf-core-tools deps: removed redundant python dep for py packages oyaml and piper
* nf-core-tools recipe: final, incl dep on py-galaxy-tool-util
* nf-core-tools: new version with extra dependency
* commit to merge packages on focus from update/nextflow-tools
* nf-core: commenting galaxy dep for this pr
* Update var/spack/repos/builtin/packages/py-requests-cache/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-requests-cache/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* removed nf-core-tools from this branch, will be back at the end
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Diffstat (limited to 'var/spack/repos/builtin/packages/py-refgenie/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/py-refgenie/package.py | 25 |
1 files changed, 25 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-refgenie/package.py b/var/spack/repos/builtin/packages/py-refgenie/package.py new file mode 100644 index 0000000000..d2a5904a96 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-refgenie/package.py @@ -0,0 +1,25 @@ +# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + + +from spack.package import * + + +class PyRefgenie(PythonPackage): + """Refgenie manages storage, access, and transfer of reference genome resources.""" + + homepage = "http://refgenie.databio.org" + pypi = "refgenie/refgenie-0.12.1.tar.gz" + + version("0.12.1", sha256="cfd007ed0981e00d019deb49aaea896952341096494165cb8378488850eec451") + + depends_on("python@3.5:", type=("build", "run")) + depends_on("py-setuptools", type="build") + + depends_on("py-logmuse@0.2.6:", type=("build", "run")) + depends_on("py-piper@0.12.1:", type=("build", "run")) + depends_on("py-pyfaidx@0.5.5.2:", type=("build", "run")) + depends_on("py-refgenconf@0.12.2:", type=("build", "run")) + depends_on("py-yacman@0.8.3:", type=("build", "run")) |