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| author | Nick Booher <njbooher@iastate.edu> | 2020-09-02 11:29:40 -0500 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2020-09-02 11:29:40 -0500 |
| commit | 0116c4471467777c567cd9af3a33d294db237b81 (patch) | |
| tree | 536f0c641e9ec9d1c56075a130046e3b3ca24849 /var | |
| parent | 24843844ae339b41ef27fca4902509bf44763f3d (diff) | |
| download | spack-0116c4471467777c567cd9af3a33d294db237b81.tar.gz spack-0116c4471467777c567cd9af3a33d294db237b81.tar.bz2 spack-0116c4471467777c567cd9af3a33d294db237b81.tar.xz spack-0116c4471467777c567cd9af3a33d294db237b81.zip | |
ldak: new package at 5.1 (#18431)
* ldak: new package at 5.1
* flake8
* Re-run tests
* Apply suggestions from code review
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/ldak/package.py | 42 |
1 files changed, 42 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/ldak/package.py b/var/spack/repos/builtin/packages/ldak/package.py new file mode 100644 index 0000000000..6114f3bc90 --- /dev/null +++ b/var/spack/repos/builtin/packages/ldak/package.py @@ -0,0 +1,42 @@ +# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Ldak(Package): + """LDAK is a software package for analyzing GWAS data""" + + homepage = "http://dougspeed.com/ldak/" + url = "http://dougspeed.com/wp-content/uploads/source.zip" + + version('5.1', sha256='9a3fe2fafc7b68cc57a17748a64db66f76b13acbd5e9a538ede20a46447fcf4a') + + variant('mkl', default=False, description='Use MKL') + + depends_on('zlib') + depends_on('blas') + depends_on('lapack') + depends_on('mkl', when='+mkl') + + def setup_build_environment(self, env): + env.append_flags('LDLIBS', '-lm') + env.append_flags('LDLIBS', '-lz') + libs = (self.spec['lapack'].libs + self.spec['blas'].libs).ld_flags + env.append_flags('LDLIBS', libs) + if self.spec.platform == 'darwin': + env.append_flags('LDLIBS', 'libqsopt.mac.a') + else: + env.append_flags('LDLIBS', 'libqsopt.linux.a') + + def install(self, spec, prefix): + if '+mkl' in spec: + make('ldak') + mkdirp(prefix.bin) + install('ldak', prefix.bin) + else: + make('ldak_slow') + mkdirp(prefix.bin) + install('ldak_slow', prefix.bin.ldak) |