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| author | snehring <7978778+snehring@users.noreply.github.com> | 2023-06-26 06:17:01 -0500 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2023-06-26 13:17:01 +0200 |
| commit | 251282812bec2e2a355d8baad1efcf5c0b2200b3 (patch) | |
| tree | 9df5b4850f30044cd1d4535b71aa1ab427e138e1 /var | |
| parent | 4ac43b50324df3c5ecfb2fab0efa1844b732476f (diff) | |
| download | spack-251282812bec2e2a355d8baad1efcf5c0b2200b3.tar.gz spack-251282812bec2e2a355d8baad1efcf5c0b2200b3.tar.bz2 spack-251282812bec2e2a355d8baad1efcf5c0b2200b3.tar.xz spack-251282812bec2e2a355d8baad1efcf5c0b2200b3.zip | |
demuxlet: add new package (#38425)
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/demuxlet/package.py | 35 |
1 files changed, 35 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/demuxlet/package.py b/var/spack/repos/builtin/packages/demuxlet/package.py new file mode 100644 index 0000000000..d87807fa2e --- /dev/null +++ b/var/spack/repos/builtin/packages/demuxlet/package.py @@ -0,0 +1,35 @@ +# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class Demuxlet(AutotoolsPackage): + """Genetic multiplexing of barcoded single cell RNA-seq""" + + homepage = "https://github.com/statgen/demuxlet" + url = "https://github.com/statgen/demuxlet" + git = "https://github.com/statgen/demuxlet.git" + + maintainers("snehring") + + version("20210211", commit="f5044eb9ed5c6678aa3a80a8f2be7db7748ee732") + + depends_on("autoconf", type="build") + depends_on("automake", type="build") + depends_on("libtool", type="build") + + depends_on("htslib@1.10") + depends_on("libdeflate", when="^htslib+libdeflate") + + def patch(self): + filter_file("-I ../../htslib/htslib", "", "Makefile.am", string=True) + filter_file("-I ../htslib/", "", "Makefile.am", string=True) + filter_file("../htslib/libhts.a", "-lhts", "Makefile.am", string=True) + if self.spec.satisfies("^htslib+libdeflate"): + filter_file("-lcrypto", "-lcrypto -ldeflate", "Makefile.am", string=True) + + def autoreconf(self, spec, prefix): + which("autoreconf")("-vfi") |