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authorJustin Stanley <molecuul@users.noreply.github.com>2018-10-26 20:23:45 -0500
committerPeter Scheibel <scheibel1@llnl.gov>2018-10-26 18:23:45 -0700
commit718ceb5e852f84ff80bdf599b0bf47026ac22421 (patch)
tree11ad131c4e7a8840b4d57adf790decc95730ac43 /var
parent70bdcd703add93ae8d647ce1e60a22fa7c765ab1 (diff)
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new package: msmc (starting at 1.1.0) (#9654)
Diffstat (limited to 'var')
-rw-r--r--var/spack/repos/builtin/packages/msmc/package.py34
1 files changed, 34 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/msmc/package.py b/var/spack/repos/builtin/packages/msmc/package.py
new file mode 100644
index 0000000000..7acde0f400
--- /dev/null
+++ b/var/spack/repos/builtin/packages/msmc/package.py
@@ -0,0 +1,34 @@
+# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class Msmc(MakefilePackage):
+ """This software implements MSMC, a method to infer population size
+ and gene flow from multiple genome sequences"""
+
+ homepage = "https://github.com/stschiff/msmc"
+ url = "https://github.com/stschiff/msmc/archive/v1.1.0.tar.gz"
+
+ version('1.1.0', sha256='989064400fe392ca3d2ac1a253ce7edf1801b6a7eeb77bbf2ff7bf67910216c4')
+
+ depends_on('gsl', type=('build', 'run'))
+ depends_on('dmd', type='build')
+
+ def edit(self, spec, prefix):
+ filter_file('dmd',
+ join_path(self.spec['dmd'].prefix.linux.bin64, 'dmd'),
+ 'Makefile', string=True)
+
+ def build(self, spec, prefix):
+ gsllibdir = self.spec['gsl'].prefix.lib
+ libgsl = join_path(gsllibdir, 'libgsl.a')
+ libgslcblas = join_path(gsllibdir, 'libgslcblas.a')
+ make('GSL={0} {1}'.format(libgsl, libgslcblas))
+
+ def install(self, spec, prefix):
+ mkdirp(prefix.bin)
+ install_tree('build', prefix.bin)